Detailed Information

Research Field/Keywords for Research Field

• Biological informatics, Mathematical biology, Mathematical physics, Theoretical biophysics, Fluid science, Biomechanics, Soft matter

Education

• 2004/03, University of Oxford, Mathematical Sciences Division, Dept. of Theoretical Physics,, Doctor Course, Completed

Employment Experience

• 2015/04 - 2019/03 Associate Professor Faculty of Systems Science and Technology, Akita Prefectural University
• 2019/04 - 2024/03 Professor Faculty of Systems Science and Technology, Akita Prefectural University
• 2024/04 -  *  Professor, Division of Mathematical and Information Sciences, Faculty of Science and Engineering, Saga University

Research Topics and Results

• Programmed disassembly of a microtubule-based membrane protrusion network coordinates 3D epithelial morphogenesis in Drosophila 2024/01
• Coordinate Normalization of Live-Cell Imaging Data Reveals Growth Dynamics of the Arabidopsis Zygote 2023/03
• Towards particle tracking velocimetry of cell flow in developing tissue using deep neural network 2020/04

Original Articles

• α-Spectrin regulates cell shape changes during disassembly of microtubule-driven protrusions in Drosophila wings;　2024/04
  ANNOUNCEMENT INFO.;　microPublication Biology
  AUTHOR;　N. V. Tran, M. P. Montanari, J. Gui, D. Lubenets, L. L. Fischbach, H. Antson, Y. Huang, E. Brutus, Y. Okada, Y. Ishimoto, T. Tonissoo, O. Shimmi
  
• Programmed disassembly of a microtubule-based membrane protrusion network coordinates 3D epithelial morphogenesis in Drosophila;　2024/01
  ANNOUNCEMENT INFO.;　The EMBO Journal, 1--27
  AUTHOR;　N. V. Tran, M. P. Montanari, J. Gui, D. Lubenets, L. L. Fischbach, H. Antson, Y. Huang, E. Brutus, Y. Okada, Y. Ishimoto, T. Tonissoo, O. Shimmi
  
• Coordinate Normalization of Live-Cell Imaging Data Reveals Growth Dynamics of the Arabidopsis Zygote;　2023/03
  ANNOUNCEMENT INFO.;　 Plant Cell Physiol., 64, 11, 1279-1288
  AUTHOR;　Zichen Kang, Hikari Matsumoto, Tomonobu Nonoyama, Sakumi Nakagawa, Yukitaka Ishimoto, Satoru Tsugawa and Minako Ueda
  
• Thickness-stiffness trade-off improves lodging resistance in rice;　2023/00
  ANNOUNCEMENT INFO.;　Sci. Rep., 13, 10828
  AUTHOR;　Satoru Tsugawa, Hiroyuki Shima, Yukitaka Ishimoto, Kazuya Ishikawa
  
• Biological and engineering study on the vein structure and ambient flow of dragonfly wings;　2021
  ANNOUNCEMENT INFO.;　The Proceedings of Conference of Tohoku Branch, 2021.56, 0, 131_paper -
  AUTHOR;　KOMAGATA Hinako;ISHIMOTO Yukitaka
  
• Development of an extension of Brownian dynamics to reproduce chromatin dynamics;　2021
  ANNOUNCEMENT INFO.;　The Proceedings of Conference of Tohoku Branch, 2021.56, 0, 130_paper -
  AUTHOR;　TAKAHASHI Yuki;ISHIMOTO Yukitaka
  
• Collective behaviours and ambient flow in barnacle cypris larvae;　2021
  ANNOUNCEMENT INFO.;　The Proceedings of Conference of Tohoku Branch, 2021.56, 0, 129_paper -
  AUTHOR;　SUZUKI Kyohei;ISHIMOTO Yukitaka
  
• Towards particle tracking velocimetry of cell flow in developing tissue using deep neural network;　2020/04
  ANNOUNCEMENT INFO.;　Lecture Notes in Computational Vision and Biomechanics, Vol. 36 (2020) 495-504, 36, 495-504
  AUTHOR;　Y. Ishimoto, T. Watanabe
  
• Bubbly Cell Tracking Velocimetry – An algorithm for cell vertex and cell shape tracking;　2020
  ANNOUNCEMENT INFO.;　The Proceedings of Conference of Tohoku Branch, 2020.55, 0, 107_paper -
  AUTHOR;　Kashiwa MASAYUKI;ISHIMOTO Yukitaka
  
• Theoretical analysis of relationship between rod-like polymer orientation and crossflow in a flow-focusing device;　2020
  ANNOUNCEMENT INFO.;　The Proceedings of Conference of Tohoku Branch, 2020.55, 0, 119_paper -
  AUTHOR;　USUI Takumi;ISHIMOTO Yukitaka
  
• Dynamical rheological properties of an epithelial tissue in a mechanically stable state;　2019
  ANNOUNCEMENT INFO.;　The Proceedings of the Bioengineering Conference Annual Meeting of BED/JSME, 2019.31, 0, 1E12 -
  AUTHOR;　TOYOSHIMA Takuya;ISHIMOTO Yukitaka
  
• Development of red blood cell model expressing hemolysis;　2019
  ANNOUNCEMENT INFO.;　The Proceedings of the Bioengineering Conference Annual Meeting of BED/JSME, 2019.31, 0, 2G24 -
  AUTHOR;　KASAHARA Keisuke;NIX Stephanie;ISHIMOTO Yukitaka
  
• Mass transport near a deforming red blood cell;　2018
  ANNOUNCEMENT INFO.;　The Proceedings of the Bioengineering Conference Annual Meeting of BED/JSME, 2018.3, 0, 1F06 -
  AUTHOR;　NIX Stephanie;FUJIWARA Wataru;ISHIMOTO Yukitaka
  
• Bubbly vertex dynamics: A dynamical and geometrical model for epithelial tissues with curved cell shapes;　2014/11
  ANNOUNCEMENT INFO.;　Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 90, 5, -
  AUTHOR;　Ishimoto, Yukitaka; Morishita, Yoshihiro
  

Material, Commentary, Editorials, Research Report, A Comprehensive Journal Articles

• 128 Study of vortex induced vibration of multiple circular cylinder;　2018
  ANNOUNCEMENT INFO.;　The Proceedings of Conference of Tohoku Branch, 2018.53, 0, 55 - 56
  AUTHOR;　KIKUCHI Kei;NIX Stephanie;ISHIMOTO Yukitaka
  
• 179 Estimation of change in fluid engineering function using growth model of plant root circulation system;　2018
  ANNOUNCEMENT INFO.;　The Proceedings of Conference of Tohoku Branch, 2018.53, 0, 155 - 156
  AUTHOR;　USUI Kohei;ISHIMOTO Yukitaka
  
• Mechanical models for diversified insect wing margin shapes;　2018
  ANNOUNCEMENT INFO.;　The Proceedings of the Bioengineering Conference Annual Meeting of BED/JSME, 2018.3, 0, 2B04 -
  AUTHOR;　ISHIMOTO Yukitaka;SUGIMURA Kaoru
  
• 186 Viscoelasticity of epithelial tissue: Rheological characteristic by in silico experiment;　2018
  ANNOUNCEMENT INFO.;　The Proceedings of Conference of Tohoku Branch, 2018.53, 0, 169 - 170
  AUTHOR;　TOYOSHIMA Takuya;ISHIMOTO Yukitaka
  
• Rheological properties of tissues by ordinary vertex and bubbly vertex models;　2018
  ANNOUNCEMENT INFO.;　Meeting Abstracts of the Physical Society of Japan, 73.1, 0, 2616 - 2616
  AUTHOR;　Ishimoto Yukitaka
  
• 185 Development of a simulation model to reproduce red blood cell rupture;　2018
  ANNOUNCEMENT INFO.;　The Proceedings of Conference of Tohoku Branch, 2018.53, 0, 167 - 168
  AUTHOR;　KASAHARA Keisuke;NIX Stephanie;ISHIMOTO Yukitaka
  
• Study of the relation between the biological structure and fluid dynamical functions of dragonfly wings.;　2018
  ANNOUNCEMENT INFO.;　The Proceedings of the Bioengineering Conference Annual Meeting of BED/JSME, 2018.3, 0, 1I08 -
  AUTHOR;　OMORI Luna;NIX Stephanie;ISHIMOTO Yukitaka
  
• Mass transport of molecules undergoing Brownian motion near a red blood cell in shear flow;　2018
  ANNOUNCEMENT INFO.;　The Proceedings of Mechanical Engineering Congress, Japan, 2018, 0, J0210103 -
  AUTHOR;　NIX Stephanie;ISHIMOTO Yukitaka
  
• Bubbly vertex model for viscoelastic properties of epithelial tissues;　2017
  ANNOUNCEMENT INFO.;　The Proceedings of the Bioengineering Conference Annual Meeting of BED/JSME, 2017.29, 0, 2A12 -
  AUTHOR;　ISHIMOTO Yukitaka
  
• Reproduction Simulation on Chromosome Formation using Chromatin Dynamics Model;　2017
  ANNOUNCEMENT INFO.;　The Proceedings of Conference of Tohoku Branch, 2017.52, 0, 103 -
  AUTHOR;　ITO Hiroaki;NIX Stephanie;ISHIMOTO Yukitaka
  
• A coarse-grained model and simulation study for a lipid membrane;　2017
  ANNOUNCEMENT INFO.;　The Proceedings of Conference of Tohoku Branch, 2017.52, 0, 105 -
  AUTHOR;　Miura Hirona;Ishimoto Yukitaka;Nix Stephanie
  
• Dynamical interfacial phenomenon and flow field of magnetic fluid in alternating magnetic field;　2017
  ANNOUNCEMENT INFO.;　The Proceedings of Conference of Tohoku Branch, 2017.52, 0, 101 -
  AUTHOR;　IBATA Yosuke;NIX Stephanie;ISHIMOTO Yukitaka
  
• A mechanical model for diversified insect wing margin shapes;　2017
  ANNOUNCEMENT INFO.;　Meeting Abstracts of the Physical Society of Japan, 72.2, 0, 2504 - 2504
  AUTHOR;　Ishimoto Yukitaka;Sugimura Kaoru
  
• 2D lattice liquid model on triangular/square lattices for the fluidity of a lipid membrane;　2017
  ANNOUNCEMENT INFO.;　Meeting Abstracts of the Physical Society of Japan, 72.2, 0, 2776 - 2776
  AUTHOR;　Ishimoto Yukitaka;Miura Hirona
  
• 開閉運動する花弁細胞の表面形状変化の研究;　2016/12
  ANNOUNCEMENT INFO.;　, 35, 6, 491 - 495
  AUTHOR;　
  
• 22aAR-4 A mechanical model of Drosophila wing morphogenesis;　2015
  ANNOUNCEMENT INFO.;　Meeting Abstracts of the Physical Society of Japan, 70.1, 0, 3284 -
  AUTHOR;　Ishimoto Y.;Sugimura K.;Morishita Y.
  
• 高分子の流体効果,DNA凝縮 : 科学者の楽園インドバンガロールより;　2008/01
  ANNOUNCEMENT INFO.;　, 89, 4, 449 - 526
  AUTHOR;　Kikuchi, Norio;Ishimoto, Yukitaka
  
• 27pRH-1 Low energy states of a semiflexible polymer chain and the conformational transitions;　2006
  ANNOUNCEMENT INFO.;　Meeting Abstracts of the Physical Society of Japan, 61.1.2, 0, 348 -
  AUTHOR;　Ishimoto Yukitaka;Kikuchi Norio
  
• Boundary Logarithmic CFT : a two-point function of c=-2;　2003
  ANNOUNCEMENT INFO.;　Soryushiron Kenkyu Electronics, 107, 4, D52 -
  AUTHOR;