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Visualization of the Sets of DNA Sequences using Visualization of the Sets of DNA Sequences using Self Organizing Maps based on Correlation Coefficients

発表形態:
一般講演(学術講演を含む)
主要業績:
主要業績
単著・共著:
共著
発表年月:
2013年12月
DOI:
会議属性:
国際会議(国内開催を含む)
査読:
有り
リンク情報:

日本語フィールド

著者:
Hiroshi Dozono, Gen Niina
題名:
Visualization of the Sets of DNA Sequences using Visualization of the Sets of DNA Sequences using Self Organizing Maps based on Correlation Coefficients
発表情報:
2013 IEEE International Conference on Bioinformatics and Biomedicine ページ: 27-29
キーワード:
概要:
抄録:
Recently, Next Generation Sequencing(NGS) tech- niques produces huge amount of sequence data day by day. To analyze the sequence data, the efficient method which can handle large amount of data is required. Self Organizing Map (SOM), which uses the frequencies of N-tuples, can categorize the set of DNA sequences with unsupervised learning. In this paper, SOM which uses the correlation coefficient among the nucleotides is proposed, and the performance is examined in the experiments of mapping the genome sequences of several species.

英語フィールド

Author:
Hiroshi Dozono, Gen Niina
Title:
Visualization of the Sets of DNA Sequences using Visualization of the Sets of DNA Sequences using Self Organizing Maps based on Correlation Coefficients
Announcement information:
2013 IEEE International Conference on Bioinformatics and Biomedicine Page: 27-29
An abstract:
Recently, Next Generation Sequencing(NGS) tech- niques produces huge amount of sequence data day by day. To analyze the sequence data, the efficient method which can handle large amount of data is required. Self Organizing Map (SOM), which uses the frequencies of N-tuples, can categorize the set of DNA sequences with unsupervised learning. In this paper, SOM which uses the correlation coefficient among the nucleotides is proposed, and the performance is examined in the experiments of mapping the genome sequences of several species.


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